During a routine manouver on 06-05-98, Flight Dynamics Facility (FDF) analysts observed thrusters firing asynchronously, which could cause excessive nutation. A thruster abort was issued. The manouver was aborted on the 14th of 16 repeat counts and determined to be near the original desired result. Following the thruster abort, the Attitude Determination System (ADS) software calculated an incorrect spin rate of 3.75 RPM instead of the nominal 4.99 RPM. The ACE Flight Ops Team (FOT) and FDF confirmed the 4.99 RPM spin rate and nominal spacecraft attitude from other telemetry data. Analysis of the telemetry indicated that parameters related to the sunpulse time tags were not updating. Further investigation led to the conclusion that the thruster abort had caused a timing problem in the Command and Data Handling (C&DH) subsystem onboard the spacecraft, and that a C&DH reset would most likely be necessary to restore the C&DH to its original state. Since attitude manouvers use the sunpulse as a referance, it was determined that attitude manouvers could not be performed without risk until the anomaly was resolved. A reset of C&DH-A was scheduled for Friday, 06-12-98. Tuesday, Wednesday and Thursday (08-09-98 to 06-11-98) were spent performing various actions in an attempt to clear up the problem and to avoid a C&DH reset. In addition, the science instruments were put in standby mode in preparation for C&DH reset, and a dump of C&DH memory was performed. Analysis of the C&DH memory dump by engineers at Johns Hopkins University/Applied Physics Lab (JHU/APL) indicated that a memory poke to a location in C&DH-A memory would clear up the problem. On Friday, 06-12-98, the memory poke was executed, and the C&DH returned to normal operation. Reset of the C&DH was not necessary. At this time, all indications are that things are back to normal, and the science instruments are being commanded back into their operational states.